PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003449.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 774aa MW: 87655.1 Da PI: 8.3922

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003449.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.3	3.3e-20	81	179	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkw 76 +fY +YA+ GF+vr s+ k+ r+g i +r +vCs+eg + ++k ++k+rr+r ++r++C+a++ ++k+++g++ Itr_sc003449.1_g00005.1 81 QFYMDYARASGFDVRHSTLKRG-RDGAINMRYLVCSREGVKGGGRHKanygqdgdggSTKQRRRRISNRVKCNAMICLRKDHTGEF 165 6**************99997.8999********99887777799***9************************ PP FAR1 77 evtkleleHnHela 90 +++ +++eH+H+l+ Itr_sc003449.1_g00005.1 166 VISIFVEEHSHSLC 179 ***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.6E-17	81	179	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.6E-31	300	391	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.075	581	617	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0028	592	619	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MITAMSLHPA EEICGTTTSP EGVAGGMPSS GDKGVCSSGE SLTNRTMVVT SEYVKFWIPD 60 VDDALLPTLG RRFPTLAQGI QFYMDYARAS GFDVRHSTLK RGRDGAINMR YLVCSREGVK 120 GGGRHKANYG QDGDGGSTKQ RRRRISNRVK CNAMICLRKD HTGEFVISIF VEEHSHSLCS 180 EPSRVFMRGN RKLNAAQQAF IADCIKANIG PSKGFRLYKE GAGSYANVGA TNMEFHNFKR 240 DLQQYIVGAD GEMIIEKFTQ KREVCGSFFF DYHLDEEQRL ARLFWADPTC RSNYPCYGDV 300 LSFDATYDTN RYCLVFVPFT GVDNHKRCVT FAAGLLTRED SDSYAWLLEK FKLAMGQSPR 360 CVVTDQDPAM KVAVERVFPE CRHRFCMWHI MIKVGERIGP ELAKDEVFRR RLNGIVWSDM 420 ISTAEFEMQW TTLMEEYGLT DHRWLCKLYA ERSFWIPAFF TDMPMSGLLR TTSHSEAENN 480 AFGQFTRPHS TVVEFYVQFE SVLETQRHKQ AKLNAQCEGY LPEFKTPLAL ERHVAQLYTL 540 TIFYELQKEI IAGCFYCRVE GVRKEQGYTQ YDIKGEDNRV FCVSWGPEFL NAHCSCRLFH 600 KLGLVCRHMF LVFKDAQLDT IPPQYVVRRW RKQPSVEASI VGVSEGGTSN SGPNGLWIAI 660 NACAGMVGNS ESRMSRMLQV LKELRQEFLI DGTSSSHDKG HSVAIQALCG VQPPTTIRIK 720 APAKAKNKGS GKRMKSKREL AIEESRKGAR KCHLCNRYDG HDTHNCPLKD VESA

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MITAMSLHPA EEICGTTTSP EGVAGGMPSS GDKGVCSSGE SLTNRTMVVT SEYVKFWIPD  60
VDDALLPTLG RRFPTLAQGI QFYMDYARAS GFDVRHSTLK RGRDGAINMR YLVCSREGVK  120
GGGRHKANYG QDGDGGSTKQ RRRRISNRVK CNAMICLRKD HTGEFVISIF VEEHSHSLCS  180
EPSRVFMRGN RKLNAAQQAF IADCIKANIG PSKGFRLYKE GAGSYANVGA TNMEFHNFKR  240
DLQQYIVGAD GEMIIEKFTQ KREVCGSFFF DYHLDEEQRL ARLFWADPTC RSNYPCYGDV  300
LSFDATYDTN RYCLVFVPFT GVDNHKRCVT FAAGLLTRED SDSYAWLLEK FKLAMGQSPR  360
CVVTDQDPAM KVAVERVFPE CRHRFCMWHI MIKVGERIGP ELAKDEVFRR RLNGIVWSDM  420
ISTAEFEMQW TTLMEEYGLT DHRWLCKLYA ERSFWIPAFF TDMPMSGLLR TTSHSEAENN  480
AFGQFTRPHS TVVEFYVQFE SVLETQRHKQ AKLNAQCEGY LPEFKTPLAL ERHVAQLYTL  540
TIFYELQKEI IAGCFYCRVE GVRKEQGYTQ YDIKGEDNRV FCVSWGPEFL NAHCSCRLFH  600
KLGLVCRHMF LVFKDAQLDT IPPQYVVRRW RKQPSVEASI VGVSEGGTSN SGPNGLWIAI  660
NACAGMVGNS ESRMSRMLQV LKELRQEFLI DGTSSSHDKG HSVAIQALCG VQPPTTIRIK  720
APAKAKNKGS GKRMKSKREL AIEESRKGAR KCHLCNRYDG HDTHNCPLKD VESA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	731	737	KRMKSKR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-88	FAR1-related sequence 5